Extending AFLP sequences by long template PCR amplification of a fungal genomic library.

1.Fierro-Monti, I. and M.B. Mathews. 2000. Proteins binding to duplexed RNA: one motif, multiple functions. Trends Biochem. Sci. 25:241-246. 2.Hutvagner, G. and P.D. Zamore. 2002. RNAi: nature abhors a double-strand. Curr. Opin. Genet. Dev. 12:225-232. 3.Samuel, C.E., K.L. Kuhen, C.X. George, L.G. Ortega, R. Rende-Fournier, and H. Tanaka. 1997. The PKR protein kinase—an interferon-inducible regulator of cell growth and differentiation. Int. J. Hematol. 65:227237. 4.Yakhnin, A.V. and P. Babitzke. 2002. NusAstimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro. Proc. Natl. Acad. Sci. USA 99:11067-11072. 5.Boldyreva, L.G., A.S. Boutorine, and S.K. Vassilenko. 1978. Molecular weight distribution of products of hydrolysis of polyuridylic acid by cobra venom ribonuclease. Preparative production of polynucleotides with set molecular weight. Biokhimiya 43:1659-1664. 6.Ehresmann, C., F. Baudin, M. Mougel, P. Romby, J.P. Ebel, and B. Ehresmann. 1987. Probing the structure of RNAs in solution. Nucleic Acids Res. 15:9109-9128. 7.Krol, A. and P. Carbon. 1989. A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol. 180:212-227. 8.Lowman, H.B. and D.E. Draper. 1986. On the recognition of helical RNA by cobra venom V1 nuclease. J. Biol. Chem. 261:53965403. 9.Vassilenk, S.K. and V.C. Rythe. 1975. The isolation of highly purified ribonuclease from central Asian cobra (Naja oxiana) venom. Biokhimiya 40:578-582. 10.Knapp, G. 1989. Enzymatic approaches to probing of RNA secondary and tertiary structure. Methods Enzymol. 180:192-212. 11.Lockard, R.E. and A. Kumar. 1981. Mapping tRNA structure in solution using doublestrand-specific ribonuclease V1 from cobra venom. Nucleic Acids Res. 9:5125-5140. 12.Puglisi, J.D. and J.R. Wyatt. 1995. Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots. Methods Enzymol. 261:323-350. 13.Favorova, O.O., F. Fasiolo, G. Keith, S.K. Vassilenko, and J.P. Ebel. 1981. Partial digestion of tRNA—aminoacyl-tRNA synthetase complexes with cobra venom ribonuclease. Biochemistry 20:1006-1011. 14.Povirk, L.F. and R.J. Steighner. 1990. High ionic strength promotes selective 3′-phosphatase activity of T4 polynucleotide kinase. BioTechniques 9:562. 15.Cameron, V. and O.C. Uhlenbeck. 1977. 3′-Phosphatase activity in T4 polynucleotide kinase. Biochemistry 16:5120-5126. 16.Richardson, C.C. 1981. Bacteriophage T4 polynucleotide kinase, p. 299-314. In P.D. Boyer (Ed.), The Enzymes. Academic Press, New York. 17.Schurer, H., K. Lang, J. Schuster, and M. Morl. 2002. A universal method to produce in vitro transcripts with homogeneous 3′ ends. Nucleic Acids Res. 30:e56. 18.Brown, T.S., D.M. Chadalavada, and P.C. Bevilacqua. 2004. Design of a highly reactive HDV ribozyme sequence uncovers facilitation of RNA folding by alternative pairings and physiological ionic strength. J. Mol. Biol. 341:695-712. 19.Zhang, H., F.A. Kolb, L. Jaskiewicz, E. Westhof, and W. Filipowicz. 2004. Single processing center models for human Dicer and bacterial RNase III. Cell 118:57-68.